Standardized gene nomenclature adopted in REDIdb

Derived from GObase (The Organelle Genome Database)

Gene and product list for Mitochondria

gene_name useful_for_REDIdb prod_name
atp1 atp1 ATP synthase F1 subunit alpha
atp2 atp2 ATP synthase F1 subunit beta
atp3 atp3 ATP synthase F1 subunit gamma
atp4 atp4 ATP synthase F1 subunit b
atp6 atp6 ATP synthase F0 subunit 6
atp8 atp8 ATP synthase F0 subunit 8
atp9 atp9 ATP synthase F0 subunit 9
cob cytb apocytochrome b
cox1 cox1 cytochrome c oxidase subunit 1
cox2 cox2 cytochrome c oxidase subunit 2
cox3 cox3 cytochrome c oxidase subunit 3
g3 gre3 G-rich region 3
g4 gre4 G-rich region 4
matR matR maturase R
nad1 nad1 NADH dehydrogenase subunit 1
nad2 nad2 NADH dehydrogenase subunit 2
nad3 nad3 NADH dehydrogenase subunit 3
nad4 nad4 NADH dehydrogenase subunit 4
nad4L nad4L NADH dehydrogenase subunit 4L
nad5 nad5 NADH dehydrogenase subunit 5
nad6 nad6 NADH dehydrogenase subunit 6
nad7 nad7 NADH dehydrogenase subunit 7
nad8 nad8 NADH dehydrogenase subunit 8
nad9 nad9 NADH dehydrogenase subunit 9
orf# orf# unidentified protein (# = number of amino acids)
rnpB rnpB ribonuclease P RNA
rpl1 rpl1 ribosomal protein L1
rpl11 rpl11 ribosomal protein L11
rpl12 rpl12 ribosomal protein L12
rpl13 rpl13 ribosomal protein L13
rpl14 rpl14 ribosomal protein L14
rpl15 rpl15 ribosomal protein L15
rpl16 rpl16 ribosomal protein L16
rpl17 rpl17 ribosomal protein L17
rpl18 rpl18 ribosomal protein L18
rpl19 rpl19 ribosomal protein L19
rpl2 rpl2 ribosomal protein L2
rpl20 rpl20 ribosomal protein L20
rpl21 rpl21 ribosomal protein L21
rpl22 rpl22 ribosomal protein L22
rpl23 rpl23 ribosomal protein L25
rpl24 rpl24 ribosomal protein L24
rpl27 rpl27 ribosomal protein L27
rpl28 rpl28 ribosomal protein S28
rpl29 rpl29 ribosomal protein L29
rpl3 rpl3 ribosomal protein L3
rpl30 rpl30 ribosomal protein L30
rpl31 rpl31 ribosomal protein L31
rpl32 rpl32 ribosomal protein L32
rpl33 rpl33 ribosomal protein L33
rpl34 rpl34 ribosomal protein L34
rpl35 rpl35 ribosomal protein L35
rpl36 rpl36 ribosomal protein L36
rpl4 rpl4 ribosomal protein L4
rpl5 rpl5 ribosomal protein L5
rpl6 rpl6 ribosomal protein L6
rpl7 rpl7 ribosomal protein L7
rpl9 rpl9 ribosomal protein L9
rpoA rpoA RNA polymerase subunit alpha
rpoB rpoB RNA polymerase subunit beta
rpoC rpoC RNA polymerase subunit beta'
rpoD rpoD RNA polymerase subunit sigma factor
rps1 rps1 ribosomal protein S1
rps10 rps10 ribosomal protein S10
rps11 rps11 ribosomal protein S11
rps12 rps12 ribosomal protein S12
rps13 rps13 ribosomal protein S13
rps14 rps14 ribosomal protein S14
rps15 rps15 ribosomal protein S15
rps16 rps16 ribosomal protein S16
rps17 rps17 ribosomal protein S17
rps18 rps18 ribosomal protein S18
rps19 rps19 ribosomal protein S19
rps2 rps2 ribosomal protein S2
rps20 rps20 ribosomal protein S20
rps3 rps3 ribosomal protein S3
rps4 rps4 ribosomal protein S4
rps5 rps5 ribosomal protein S5
rps6 rps6 ribosomal protein S6
rps7 rps7 ribosomal protein S7
rps8 rps8 ribosomal protein S8
rps9 rps9 ribosomal protein S9
rrn5 rrn5 5S rRNA
rrn16 rrn16 16S rRNA
rrn18 rrn18 18S rRNA
sdh1 sdh1 succinate dehydrogenase subunit 1
sdh2 sdh2 succinate dehydrogenase subunit 2
sdh3 sdh3 succinate dehydrogenase subunit 3
sdh4 sdh4 succinate dehydrogenase subunit 4
secY secY SecY-type transporter protein
trnA(ugc) trnA transfer RNA Alanine
trnC(gca) trnC transfer RNA Cysteine
trnD(guc) trnD transfer RNA Aspartic Acid
trnE(uuc) trnE transfer RNA Glutamic Acid
trnF(aaa) trnF transfer RNA Phenylalanine
trnF(gaa) trnF transfer RNA Phenylalanine
trnG(gcc) trnG transfer RNA Glycine
trnG(ucc) trnG transfer RNA Glycine
trnH(gug) trnH transfer RNA Histidine
trnI(cau) trnI transfer RNA Isoleucine
trnI(gau) trnI transfer RNA Isoleucine
trnI(uau) trnI transfer RNA Isoleucine
trnK(cuu) trnK transfer RNA Lysine
trnK(uuu) trnK transfer RNA Lysine
trnL(aag) trnL transfer RNA Leucine
trnL(caa) trnL transfer RNA Leucine
trnL(gag) trnL transfer RNA Leucine
trnL(uaa) trnL transfer RNA Leucine
trnL(uag) trnL transfer RNA Leucine
trnM(cau) trnM transfer RNA Methionine
trnM(uau) trnM transfer RNA Methionine
trnN(guu) trnN transfer RNA Asparagine
trnP(ggg) trnP transfer RNA Proline
trnP(ugg) trnP transfer RNA Proline
trnQ(uug) trnQ transfer RNA Glutamine
trnR(acg) trnR transfer RNA Arginine
trnR(ccg) trnR transfer RNA Arginine
trnR(gcg) trnR transfer RNA Arginine
trnR(ucg) trnR transfer RNA Arginine
trnR(ucu) trnR transfer RNA Arginine
trnS(cga) trnS transfer RNA Serine
trnS(gcu) trnS transfer RNA Serine
trnS(gga) trnS transfer RNA Serine
trnS(uga) trnS transfer RNA Serine
trnT(ggu) trnT transfer RNA Threonine
trnT(ugc) trnT transfer RNA Threonine
trnT(ugu) trnT transfer RNA Threonine
trnV(gac) trnV transfer RNA Valine
trnV(uac) trnV transfer RNA Valine
trnW(cca) trnW transfer RNA Tryptophan
trnW(uca) trnW transfer RNA Tryptophan
trnY(gua) trnY transfer RNA Tyrosine
tufA tufA elongation factor
ccmFN1 ccmFN1 cytochrome c biogenesis orf382
ccmFN2 ccmFN2 cytochrome c biogenesis orf203
ccmF cccb6c cytochrome c biogenesis orf452
ccmB ccb2 cytochrome c biogenesis orf206
ccmC ccb3 cytochrome c biogenesis
ccmFn ccb6n cytochrome c biogenesis
murf2 murf2 Maxicircle unidentified reading frame 2

Gene and product list for Chloroplasts

gene_name useful_for_REDIdb prod_name
accD accD acetyl-CoA carboxylase beta subunit
atpA atpA ATP synthase subunit alpha
atpB atpB ATP synthase subunit beta
atpE atpE ATP synthase subunit epsilon
atpF atpF ATP synthase subunit I
atpH atpH ATP synthase subunit III
atpI atpI ATP synthase subunit IV
ccsA ccsA cytochrome c biogenesis
chlB chlB photochlorophyllide reductase subunit ChlB
chlL chlL photochlorophyllide reductase subunit ChlL
chlN chlN photochlorophyllide reductase subunit ChlN
clpP clpP clp protease proteolytic subunit
cysA cysA sulfate ABC transporter protein
infA infA translation initiation factor 1
matK matK maturase K
ndhA ndhA NADH dehydrogenase subunit 1
ndhB ndhB NADH dehydrogenase subunit 2
ndhC ndhC NADH dehydrogenase subunit 3
ndhD ndhD NADH dehydrogenase subunit 4
ndhE ndhE NADH dehydrogenase subunit 4L
ndhF ndhF NADH dehydrogenase subunit 5
ndhG ndhG NADH dehydrogenase subunit 6
ndhH ndhH NADH dehydrogenase subunit 7
ndhI ndhI NADH dehydrogenase subunit I
ndhJ ndhJ NADH dehydrogenase subunit J
ndhK ndhK NADH dehydrogenase subunit K
petA petA cytochrome f
petB petB cytochrome b6
petD petD cytochrome b6/f subunit IV
petG petG cytochrome b6/f subunit V
petL petL cytochrome b6/f subunit VI
petN petN cytochrome b6/f subunit VIII
psaA psaA photosystem I P700 apoprotein A1
psaB psaB photosystem I P700 apoprotein A2
psaJ psaJ photosystem I subunit IX
psbB psbB photosystem II 47 kDa protein
psbC psbC photosystem II 44 kDa protein
psbD psbD photosystem II protein D2
psbE psbE photosystem II cytochrome b559 subunit alpha
psbF psbF photosystem II cytochrome b559 subunit beta
psbH psbH photosystem II phosphoprotein
psbJ psbJ photosystem II reaction center protein J
psbL psbL photosystem II reaction center protein L
psbM psbM photosystem II reaction center protein M
psbT psbT photosystem II reaction center protein T
psbZ psbZ photosystem II reaction center protein Z
rbcL rbcL ribulose 1,5-bisphosphate carboxylase/oxygenase large subunit
rpoC1 rpoC1 RNA polymerase beta subunit-1
rpoC2 rpoC2 RNA polymerase beta subunit-2
ycfX ycfX hypothetical protein