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Splicing Factors Search
Splicing Factor
9G8
CUG-BP1
DAZAP1
ESRP1
ESRP2
ETR-3
FMRP
Fox-1
Fox-2
hnRNP A0
hnRNP A1
hnRNP A2/B1
hnRNP A3
hnRNP C
hnRNP C1
hnRNP C2
hnRNP D
hnRNP D0
hnRNP DL
hnRNP E1
hnRNP E2
hnRNP F
hnRNP G
hnRNP H1
hnRNP H2
hnRNP H3
hnRNP I (PTB)
hnRNP J
hnRNP K
hnRNP L
hnRNP LL
hnRNP M
hnRNP P (TLS)
hnRNP Q
hnRNP U
HTra2alpha
HTra2beta1
HuB
HuC
HuD
HuR
KSRP
MBNL1
Nova-1
Nova-2
nPTB
PSF
QKI
RBM25
RBM4
RBM5
Sam68
SAP155
SC35
SF1
SF2/ASF
SLM-1
SLM-2
SRm160
SRp20
SRp30c
SRp38
SRp40
SRp54
SRp55
SRp75
TDP43
TIA-1
TIAL1
YB-1
ZRANB2
Gene
A2BP1
CUGBP1
CUGBP2
DAZAP1
ELAVL1
ELAVL2
ELAVL3
ELAVL4
ESRP1
ESRP2
FMR1
FUS
HNRNPA0
HNRNPA1
HNRNPA2B1
HNRNPA3
HNRNPC
HNRNPD
HNRNPF
HNRNPH1
HNRNPH2
HNRNPH3
HNRNPK
HNRNPL
HNRNPM
HNRNPU
HNRPDL
HNRPLL
KHDRBS1
KHDRBS2
KHDRBS3
KHSRP
MBNL1
NOVA1
NOVA2
PCBP1
PCBP2
PTBP1
PTBP2
QKI
RBFOX2
RBM25
RBM4
RBM5
RBMX
SF1
SF3B1
SFPQ
SFRS1
SFRS11
SFRS13A
SFRS2
SFRS3
SFRS4
SFRS5
SFRS6
SFRS7
SFRS9
SRRM1
SYNCRIP
TARDBP
TIA1
TIAL1
TRA2A
TRA2B
YBX1
ZRANB2
Binding site length
longer than:
shorter than:
SF binding sites in
Ad2 (Human Adenovirus C serotype 2)
BPV-1 (Bovine Papillomavirus 1)
Chicken
CVB3 (Coxsackievirus B3)
D. melanogaster
HCV (Hepatitis C virus)
HCV2 (Hepatitis C virus 2)
HIV-1 (Human Immunodeficiency virus 1)
HPV-1 (Human Papillomavirus 1)
HPV-16 (Human Papillomavirus 16)
Human
MHV (Mouse Hepatitis virus)
Mouse
MVM (Minute virus of Mice)
PV1 (Human Poliovirus 1)
Rabbit
Rat
RSV (Rous Sarcoma virus)
S. cerevisiae
SeV (Sendai virus)
SV40 (Simian virus 40)
VSV (Vesicular Stomatitis Indiana virus)
Target chromosome
chr1
chr10
chr11
chr12
chr13
chr14
chr15
chr16
chr17
chr18
chr19
chr2
chr20
chr21
chr22
chr26
chr2L
chr3
chr3L
chr3R
chr4
chr5
chr6
chr7
chr8
chr9
chrX
chrZ
Target Gene/Element
ACTB
ACTN1
Ad2 Major Late transcript
AGER
ALOX12
ALOX15
APC
APOA2
AR
ATP2A1
ATP5B
BC1
BCL2
BCL2L1
BCYRN1
BIRC2
BPV-1 exon2 late pre-mRNA
BPV-1 L1 mRNA
BRCA1
CACNA1C
CALCA
CASP2
CBS
CD247
CD40LG
CD44
CDKN1A
CDKN1B
CDKN2A
CEBPA
CFTR
CHRNA1
COL1A1
COL1A2
COL2A1
COL3A1
CSF1R
CSF2
CVB3 5'NTR (nontranslated region)
CYP2A6
DNMT1
DSX
E1A
E2F3
ELAVL1
ENV
EPB4.1
EPB41
ERBB2
F3
FAS
FGB
FGFR2
FMR1
FN1
FOS
FTH1
GABRG2
GAG
GAP43
GAST
GNRH1
GP1
GPX1
GRIA2
GRIN1
GSTZ1
HBA2
HBB
HBB2
HCV 3'NTR (nontranslated region)
HIPK3
HIST1H2AB
HIST1H2AC
HIST1H2AD
HIST1H2AE
HIST1H2AF
HIST1H2AG
HIST1H2AH
HIST1H2AI
HIST1H2AN
HIST1H2AO
HIST1H2AP
HIV-1 TAR (trans-activation response element)
HLA-DQB1
HNRNPA1
HNRNPA2B1
HPV-1 h1ARE (AU-rich element)
HPV-1 IRES (internal ribosomal entry site)
HPV-1 late 3'UTR (untranslated region)
HPV-16 L1 mRNA
HPV-16 LRE (late regulatory element)
IFNG
IGF1
IL1B
IL2
IL3
IL4
IL8
INSR
IRF2
JUN
JUNB
MAG
MAPT
MARCKS
MBNL1
MBNL2
MBP
MHV(-)-strand leader and intergenic sequences
MIR18A
MIR21
MIR328
MIRLET7A1
MIRLET7A2
MIRLET7A3
MIRLET7B
MSL-2
MTRR
MYC
NEFL
NF1
NOP2
NOS2
NOS3
NS1
NUMB
PDHA1
PKM2
PLP1
PTBP1
PTGS2
PTH
PTPRC
PV1 5'NTR (nontranslated region)
RAC1
REN
RNU2-1
RP51A
RPL3
RSV NRS (negative regulator of splicing)
SCN4A
SCN8A
SCRIB
SERPINB2
SeV tr (trailer) RNA
SFRS7
SLC2A2
SMN1
SMN2
SRC
SV40 SVL (SV40 Late pre-mRNA)
Synthetic sequence
TAT
TGFB1
THRA
TJP1
TMX3
TNF
TNFRSF1B
TNNT2
TNNT3
TPM1
TPM2
TRA
TRA2B
TYMS
VEGFA
VIF
VSV Leader-sense RNA
XIAP
YES1
Activity
Exon definition
Exon definition of downstream sequence
Exon definition of downstream sequences
Exon definition of upstream and downstream sequence
Exon definition of upstream sequence
Intron definition
Intron definition of downstream sequence
Intron definition of upstream and downstream sequences
Intron definition of upstream sequence
Localization
3' UTR
5' UTR
Exon
Exon, 3'ss proximal
Intron
Intron, 3'ss proximal
Intron, 5'ss proximal
Intron/Exon
RNA binding motif prediction tool:
SpliceAid
and
SpliceAid2
.
If you have any scientific or technical questions please
contact us
.
