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Blast a sequence
Paste a nucleotide or protein sequence:
Command type
blastn
blastp
blastx
Database
mtDNA
CDS_nt
tRNA
rRNA
NCR>=25nt
Genetic Code (only for blastx)
Standard (1)
Vertebrate Mitochondrial (2)
Yeast Mitochondrial (3)
Mold Mitochondrial; ... (4)
Invertebrate Mitochondrial (5)
Ciliate Nuclear; ... (6)
Echinoderm Mitochondrial (9)
Euplotid Nuclear (10)
Bacteria and Archaea (11)
Alternative Yeast Nuclear (12)
Ascidian Mitochondrial (13)
Flatworm Mitochondrial (14)
Blepharisma Macronuclear (15)
Taxonomy
Expected Value
0.0001
0.001
0.01
0.1
1
10
100
1000
Matrix
BLOSUM45
BLOSUM62
BLOSUM80
PAM30
PAM70
Filter for Low complexity regions
Alignment View
pairwise
query-anchored no identities
Alignments
0
10
50
100
250
500
Descriptions
0
10
50
100
250
500
Other advanced options